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• Users
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• Topics
  • Ecosystem
  • Genome Research
    • Slide Shows
    • Sanger Run Stats (Illumina GA)
  • Analysis Methods and Algorithms
    • Solexa Pipeline
    • Bustard
    • Firecrest
    • Crosstalk correction
    • Phasing correction
    • Gerald
    • Runfolder contents
    • Cluster Software
    • Sequence Analysis
    • De Novo Assembly with Velvet
    • Frequently Asked Questions
    • Initial T in reads
    • Last base in the read
    • Why does the instrument restart every 9 hours?
    • Goodbye
  • Software Dev & Pipelines
    • SRF File Making
    • NPG Run Tracking
  • Computing & Storage
    • BioHDF Update
  • Standards & Quality
    • Sequence Read Format (SRF)
    • Illumina Read Quality at Cornell
    • Galaxy and file size management
    • quality score comparison (pdf)
    • Abstracting sequencing data
  • Example Data Sets
    • Illumina (Solexa) Examples
    • GA II Gripes
  • Reports
    • An Investigation in to early cycle errors in a single run
    • The Solexa Pipeline
    • Quality scores conversion chart
    • The Information Content of ABI SOLiD 2 Base Encoded Reads
    • Color space
    • Benchmarking Assembly Algorithms
    • Next-gen sequencing Primer
  • The Scratchpost
    • genographia logo