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Standards & Quality
an area on genographia focused on standards, formats, an common metrics
Standards
File and stream formats for short reads
SSR (sort sequence read) format
http://www.bioinform.com/issues/11_12/webreprints/139602-1.html
Mailing list - http://www.bcgsc.ca/mailman/listinfo/ssrformat
Here are some active discussions around related topics:
Galaxy and file size management
Quality Metrics
Base Read Quality
There were a number of recent email conversations about how to work with quality metrics on Illumina/Solexa systems. It would probably work well for individual facilities or researchers to create a page in this area linked to this one and allow comments on each. As things develop, we can take material from those pages to assemble a comprehensive view.
To create a page automatically, just enclose a page tile in double-nested parentheses, like this:
Illumina Read Quality at Cornell
Illumina Read Quality at Sanger
and so forth.
Clicking on these links will then create a new page if one doesn't already exist. Authors: don't forget to use the edit tab -> settings on new pages to allow comments.
1000 Genomes
